GgaALTA0008918-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000021273 | E1C8L4_CHICK
Description
NA
Coordinates
chr24:5534779-5535242:-
Coord C1 exon
chr24:5535144-5535242
Coord A exon
chr24:5534922-5535014
Coord C2 exon
chr24:5534779-5534921
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCGCTCTCCTGCCTGTGCAGCTC
3' ss Score
8.52
Exon sequences
Seq C1 exon
CTCAGATTCGCCCAGCCTGCCTCCCCATGCACGGCCAGCGGTTCCAGACCGGCAGGTCCTGCTTCATCACCGGCTTCGGGAAGACCAGGGAGAACGAAG
Seq A exon
CTCTGCAGAAGGTGTGCGAGAAGCAGCAGCTTGCTCCCTCCTACAGCGGGGGACTGAGGCTGGCCCTGCCCGACGGCTCCTCCTGCCTTGCAG
Seq C2 exon
ATAACACCTCCCCAAAGCTGCGGGAGGCCGAGGTCAAACTCATTGACTACAAGATCTGCAACAGTGACAAGGTGTACGAGGGCTACCTGACCCCGCGCATGATGTGCGCTGGGTACCTGCAGGGGGGGAAGGATGCGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273-8-9,8-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGATTCGCCCAGCCTG
R:
CCCTCGTACACCTTGTCACTG
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]