GgaALTA0009106-1/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr18:7963759-7964788:-
Coord C1 exon
chr18:7964744-7964788
Coord A exon
NA
Coord C2 exon
chr18:7963759-7963832
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTCCAACCCTGTCCATCCAGCAC
3' ss Score
5.15
Exon sequences
Seq C1 exon
CGTGAGCCAGCAGCAGCAGCACTGTGTGGGATGGGGAACCCAAAG
Seq A exon
NA
Seq C2 exon
CACTGAAGGAGAGGACGAGCCTGGACATCCCCGAGCTGCAAGAAACACCACTCTGATGGAAAGCCCATTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023373-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCACTGTGTGGGATG
R:
GGGCTTTCCATCAGAGTGGTG
Band lengths:
98-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]