GgaALTA1000387-2/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNM9]
Coordinates
chr12:2656812-2657241:+
Coord C1 exon
chr12:2656812-2656942
Coord A exon
chr12:2657010-2657140
Coord C2 exon
chr12:2657141-2657241
Length
131 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CTGACTGTGCCCGTGCCCAGGTG
3' ss Score
8.99
Exon sequences
Seq C1 exon
GGATGGCGGCTGTGGAGCAGCCGGTGTTCGGTGTGGAGAAGAACTCCACGTTCCTGGAGTGCCGGGCGCGCTCCCCGCAGACAGCAGTGCGGTGGCTGGCACGGCGCGGAGAGGGGCCGGGGCTGAGCGAG
Seq A exon
GTGAGGAGCGGCGGGCGCGTGGCGGTGCTGGAGCAGGGGCTGCTGATCCGCCAGCTGGGCCGGGAGGACGCCGGCACCTACGAGTGCCAGGCTGTGGAGCACTCCTTCTCCCGGCCCCTCACCCGCTACAG
Seq C2 exon
CCTGCACGTCATCCGGCACGAGGCCGCGGAGCCGCCGCATCGCCGGGGTAAAGGGGCTGAGAGCACCTGGACGGACCCGCGGGCGCTGGGGGCACCGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-16-26,16-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.459
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(3.3=4.5),PF0767911=I-set=PU(46.1=93.2)
A:
NA
C2:
PF0767911=I-set=PD(51.7=37.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCAGCCGGTGTTC
R:
TCCGTCCAGGTGCTCTCAG
Band lengths:
195-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]