Special

GgaALTA1001466-2/2 @ galGal4

Alternative 3'ss

Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NWS8]
Coordinates
chr2:42172197-42173531:+
Coord C1 exon
chr2:42172197-42172690
Coord A exon
chr2:42173422-42173440
Coord C2 exon
chr2:42173441-42173531
Length
19 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTGCTTTAACATTACTTCAGTGT
3' ss Score
5.22
Exon sequences
Seq C1 exon
ATACAGACATCTGTCCAGTTTATCCAACGGAGGTGGTGTTTGCCCTTGATATGTCTGAAGGTGTTACTCCAGCTGCATTTGAACGAATGAGAAACATTGTTATGTCACTGCTGAAGACCATTAAGATCAGTGAAAGCAATTGCCCAACAGGCGCCCGTGTTTCCATCGTTTCTTTCAATACCAACATACGCTATCTCATTCGTTTCTCAGAATTCCAAAAACACAACTTGCTTCTACAGGCAGTCCAGAGAATACCTCTAGAGAGATCTACTGGAAAACGTAGTATTGGGACAGCTATGAGATTTGTTGCAAGAAATGTCTTCAAACGGGTTCGTCAGGGCATCCTCACAAGAAAAGTTGCCATATTTTTTGCCAGTGGTCCATCTCAGGAGGATGTGGTCGAAAGCACAGCTGTACTTGAGTTGAGCGCCTGGGATATCACTCCAGTGGTTATTGCCTTCACTGAATTGCCAAATGTCAGACGTGCCTTCTCA
Seq A exon
TGTTTTCTTTAAAACCTAG
Seq C2 exon
ATTGATGATACTGGAAGATTTCAATTATTTGTTTGGGAAAGACAACAGGATGAAAATTTGGAGAACATCACAAATTGTACACTTTGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011567-46-49,46-48-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

ORF disruption when splice site is used (sequence inclusion)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0009223=VWA=PU(86.0=93.3)
A:
NA
C2:
PF0009223=VWA=PD(12.8=74.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGGGATATCACTCCAGT
R:
TCCTGTTGTCTTTCCCAAACA
Band lengths:
117-136
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]