GgaALTA1002243-2/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr10:12537088-12538466:+
Coord C1 exon
chr10:12537088-12537459
Coord A exon
chr10:12538164-12538270
Coord C2 exon
chr10:12538271-12538466
Length
107 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
AGCGCCCCGTGTGCCCCCAGGCA
3' ss Score
9.12
Exon sequences
Seq C1 exon
TGGTTGATTTCAATGGGGTCAGACTGGTGGTGGAGACCTCCAAAGACCCCATCTATAGCTTCAGCGGTGTTAATGTCACCCTGCCCTGCCACTACCACCACGAGCCCGAATCCGAGGCCAAGCACAAGATCCGCATCAAGTGGTCCAAGCTGCGAGATGACTACACCAAGGAGCAGGACGTGCTGGTGGCCATCGGCAAGACCTACATGGCCTTCGGGGACTTCCAAGGCCGTGCTCACCTCCACCGGGCCGGACAGCGTGAAGCCTCACTGCTCATCAGCGACGTGCGCCTGCAGGATGATGGCAAATACCGCTGCGAGGTCATCGATGGGCTGGAGGATGCGAGTGATGTGGTGGAGCTTCGGCTGCGAG
Seq A exon
GCATCGTGTTCCCCTACCAACCACCCCGCGGGCAGTACAGCCTCAACTTCCACGAAGCCGAGAGAGTGTGCCAGGAGCAGGGCTCCCTCATCGCCACCTTCCACCAG
Seq C2 exon
CTCTTCCAGGCCTGGAGCGAGGGGTTGGACTGGTGCAACGCGGGCTGGCTGGCCGATGGCACCGTGCATTACCCCATCCGCCTGCCCCGCAAACCCTGCGGCGGGGTGCACCTCGCCCCGGGCATCCGCAGCTACGGCCCCCGCCACCGGCACCTGCACCGCTTTGATGTCTTCTGCTTCTCCTCCAGACTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021135-5-4,5-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=WD(100=92.0),PF0019312=Xlink=PU(0.1=0.0)
A:
NA
C2:
PF0019312=Xlink=WD(100=94.1),PF0019312=Xlink=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATACCGCTGCGAGGTCAT
R:
AGAAGACATCAAAGCGGTGCA
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]