GgaALTA1002440-3/4 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3I9]
Coordinates
chr25:1732331-1732859:+
Coord C1 exon
chr25:1732331-1732394
Coord A exon
chr25:1732706-1732722
Coord C2 exon
chr25:1732723-1732859
Length
17 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCTGCGGTTCTGGGTGCAGCAG
3' ss Score
6.99
Exon sequences
Seq C1 exon
CCCCCGGCCCCTTCCTCAGCCTCCATCCCGGCTGTAGGGGTCGGGGCTGGGCCGTGGGGCCGAG
Seq A exon
CAGAAATGGATTCCCAG
Seq C2 exon
GACATCAAAGAGCTGCAACAAGAAGTGATGGAGGAGATGGGAATCTCCATGGAGGAGCTGCAGGACATCATCAACGAGGAGCTGGAGAAGTCTGAGTACGTGAAGCAGAAGAAGCAGCAGCTGGAGGAGCTGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051-2-3,2-2,2-1,2-0-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.376
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF098244=ArsR=WD(100=95.8),PF126432=MazG-like=WD(100=63.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCATCCCGGCTGTAGG
R:
TGATGATGTCCTGCAGCTCCT
Band lengths:
118-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]