GgaALTA1002684-2/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKE5]
Coordinates
chr16:392262-392771:-
Coord C1 exon
chr16:392739-392771
Coord A exon
chr16:392363-392580
Coord C2 exon
chr16:392262-392362
Length
218 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CTGCTCTCCCTCCCTTGCAGGCC
3' ss Score
12.41
Exon sequences
Seq C1 exon
GGAAGGAGAAGAAGGATTACGAAGCAGCAGCAG
Seq A exon
GCCACGACGGAGAATCCAGCGGCTCGGCCACAGCTTTAGTGTGGAACGGGGGCTCAGGAGGGGTCCCTGTGGTTGGAGCGGTCCCAGTTCCCTGCGCTCCCCCGTTGGGCCCACGGCCGGGGCAATACTGGGCCCAGCCCTCCCTGGAGAACCCCCAGGGTGGTGAGTCAGGATGCGGATGTGGCCCCACATGATACCATCTCTTCTCACCCGCACAG
Seq C2 exon
GAAGTGAACCTTCCATCTGAGTGCTGTGCTACTTCAGCCAGCCCTGCATGCATGTGTTTGGAGTTTGTGGGTGTGTGTATCTCTGTTTGCTCAACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027955-4-7,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGAGAAGAAGGATTACGAAGC
R:
CAGGAAGTTGAGCAAACAGAGA
Band lengths:
134-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]