GgaALTA1002902-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54556621-54556968:-
Coord C1 exon
chrZ:54556853-54556968
Coord A exon
chrZ:54556737-54556765
Coord C2 exon
chrZ:54556621-54556736
Length
29 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGTGGCCTTTCATCTTGCAGTTG
3' ss Score
11.32
Exon sequences
Seq C1 exon
TGCAACTACATCGTTCCAGCCACACTCGTCATCATCATCTTCATCTGCTTCCAACAGAAGTCCTATGTATCCTCCTCCAACTTGCCTGTGCTCGCTCTTCTTCTGCTTCTCTATGG
Seq A exon
TTGGTCTATCACTCCTCTCATGTATCCAG
Seq C2 exon
CCTCCTTCGTGTTCAAAATCCCCAGCACAGCATATGTTGTGCTGACCAGTGTGAACCTCTTCATTGGCATCAATGGTAGTGTAGCCACCTTTGTCCTGGAGCTCTTCACCAACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-52-69,52-68-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.4=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCGCTCTTCTTCTGCTT
R:
CCAGGACAAAGGTGGCTACAC
Band lengths:
128-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]