GgaALTA1003327-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005206 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr9:7569833-7574426:+
Coord C1 exon
chr9:7569833-7570010
Coord A exon
chr9:7574317-7574340
Coord C2 exon
chr9:7574341-7574426
Length
24 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
ATTTCTTTTTTTTGTTTCAGTTG
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTCATCCTTGGCAAGTACACCTGGCTTTCGTATGAAGATGTATACATCAAAGCTGTTAATTTTGGAAATGGGTTAGCAGTGTTGGGTCAGCAACCAAAGACAAACATTGCTATCTTCTGTGAGACTAGAGCTGAGTGGATGATTGCAGCACAAGCCTGCTTCATGTGCAACTACCAGC
Seq A exon
TTGTTACTCTGTATGCTACCCTAG
Seq C2 exon
GAGGTGCAGCAATAGTACATGGGCTAAACGAAACAGAGGTGACCACCATCATTACTAGTAAAGAACTGATGCAAACAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005206-2-6,2-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACTAGAGCTGAGTGGA
R:
CACCTCTGTTTCGTTTAGCCCA
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]