GgaALTA1005001-3/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012509 | ARL5A
Description
ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:HGNC:696]
Coordinates
chr7:34813786-34815151:-
Coord C1 exon
chr7:34815004-34815151
Coord A exon
chr7:34813847-34813869
Coord C2 exon
chr7:34813786-34813846
Length
23 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TAACTTTTGGCTTTTTGAAGTTT
3' ss Score
5.11
Exon sequences
Seq C1 exon
CTCAATGAATGAAGTGGTGCATACCTCACCTACGATAGGCAGCAATGTGGAAGAGATCGTGGTTAACAACACACGCTTTCTGATGTGGGATATTGGAGGGCAGGAGTCCCTGCGGTCTTCGTGGAACACCTACTACACCAACACTGAG
Seq A exon
TTTGTAATAGTTGTTGTGGACAG
Seq C2 exon
CACAGACAGAGAGAGAATTTCGGTGACTAAAGAAGAACTGTATAAGATGTTAGCACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012509-9-12,9-11,9-10,9-9-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(28.8=100)
A:
NA
C2:
PF0002516=Arf=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGCTTTCTGATGTGGGA
R:
ACCGAAATTCTCTCTCTGTCTGTG
Band lengths:
103-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]