GgaALTA1006155-3/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000156 | BRD2
Description
bromodomain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001025845]
Coordinates
chr16:92233-92765:+
Coord C1 exon
chr16:92233-92487
Coord A exon
chr16:92605-92631
Coord C2 exon
chr16:92632-92765
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCTGGCTGCCCTCTCACAGGGC
3' ss Score
7.44
Exon sequences
Seq C1 exon
GATGTCTTTGAGTTCAGCTACGCCAAGATGCCTGATGAGCCGCAGGACGCCAGCCCACCCTCAGTGTCTGCCCCACTGCTTGGAGCCCTCTCCAAATCCTCCTCCGAGGAATCCTCCAGCGATGAGGATGATGAAGATGAAGATGATGAGGATGATGATGAGGATGAGAGCAGTAGTGAGAGCTCATCAGAGAGCGAGGAGAGCTCTGACTCGGAAGAGGAACGTGCCAACCGCCTGGCAGAGCTGCAGGAGCAG
Seq A exon
GGCCCCGTTTCCAAACCCAAAAAGAAG
Seq C2 exon
CGGGAGAAAAAGAAAAAGAAGAAATCAGAGAAGCACAAAGGGCGAGGAGGAGATGAAGAGAGCCGGGCGCGTCAGGCGCAGCTCCGCAAAGCCAAGAAGGGCGGCGGCGGGGGGAGCGGCGGGGGCAGCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000156-17-20,17-19,17-18,17-17-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF031159=Astro_capsid=FE(47.5=100)
A:
NA
C2:
PF031159=Astro_capsid=PD(33.3=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGAGAGCGAGGAGAGC
R:
CGCCCTTTGTGCTTCTCTGAT
Band lengths:
116-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]