GgaALTA1006646-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:46792-47179:-
Coord C1 exon
chr16:47086-47179
Coord A exon
chr16:47000-47002
Coord C2 exon
chr16:46792-46999
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TTGCATATCCCAACCCCCAGCAG
3' ss Score
3.64
Exon sequences
Seq C1 exon
GTGCTCCGCCAGTTCCGCCTGCTGTCACCTCCGAACGCCACGTGCCAGGCGCTGCACCTGGAGGTGGCCATCACCGGCCCCATCCTGTACCATG
Seq A exon
CAG
Seq C2 exon
ATGAGGACTACGAGGACTACGAGGACTACGAGGAGGCGGAGCCTAAGGAGGGGGAGGAGCCTACGGAAGGGGCAGTGCCCGTGGAAGGGGCGGGGCCAGCAGATGACCCCGCCCCCCTCAGCCCGGTGTCCTTATGGGATGCCCGTAAGCGGCAACGCCGCAGCACACATAACCCTGCCCACGAGGTGGCCTTCCTCGTCTGCTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-39-50,39-49-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGTCACCTCCGAACG
R:
CGTAGTCCTCGTAGTCCTCGT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]