GgaALTA1006650-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:44679-45160:-
Coord C1 exon
chr16:45077-45160
Coord A exon
NA
Coord C2 exon
chr16:44679-44765
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGTGTACTGGTGCAGGGCAGGAC
3' ss Score
0.64
Exon sequences
Seq C1 exon
CACTGGTGGTTCGGGTGCTGTCCCAGAGTGAGATAGGGGCTTTTGTGGCGTTTGAGACGGAAATCAAGGAGGTGCTGCTTGAAG
Seq A exon
NA
Seq C2 exon
GACACAGCAGTGGCCCCTGGGGAGCGGAGGCGGCTGCTGGTGCGGAAGAGCTGCCCACTGCGCCTGCAACTCCACAACATCTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-46-62,46-61-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0175916=NTR=FE(25.2=100)
A:
NA
C2:
PF0175916=NTR=FE(39.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATCAAGGAGGTGCTGCT
R:
AGATGTTGTGGAGTTGCAGGC
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]