GgaALTA1006650-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:44679-45160:-
Coord C1 exon
chr16:45077-45160
Coord A exon
chr16:44766-44770
Coord C2 exon
chr16:44679-44765
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ACTGGTGTGTACTGGTGCAGGGC
3' ss Score
5.71
Exon sequences
Seq C1 exon
CACTGGTGGTTCGGGTGCTGTCCCAGAGTGAGATAGGGGCTTTTGTGGCGTTTGAGACGGAAATCAAGGAGGTGCTGCTTGAAG
Seq A exon
GGCAG
Seq C2 exon
GACACAGCAGTGGCCCCTGGGGAGCGGAGGCGGCTGCTGGTGCGGAAGAGCTGCCCACTGCGCCTGCAACTCCACAACATCTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646-46-62,46-61-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0175916=NTR=FE(25.2=100)
A:
NA
C2:
PF0175916=NTR=FE(39.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATCAAGGAGGTGCTGCT
R:
AGATGTTGTGGAGTTGCAGGC
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]