GgaALTA1007055-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000010186 | CAPN1
Description
Calpain-1 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P00789]
Coordinates
chr3:29682590-29682841:-
Coord C1 exon
chr3:29682773-29682841
Coord A exon
NA
Coord C2 exon
chr3:29682590-29682668
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTCTGTGATGGCTTTTGCAGACA
3' ss Score
7.99
Exon sequences
Seq C1 exon
AAAGATGGCAGTGCCCGCCTGGGGCTGGTGGAGTTCCAGATCCTATGGAACAAGATCCGCAGCTGGCTG
Seq A exon
NA
Seq C2 exon
ACAATCTTCCGCCAGTATGACCTGGATAAATCAGGCACCATGAGCTCATACGAGATGCGCATGGCTCTAGAGTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-23-25,23-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(3.6=4.3)
A:
NA
C2:
PF0003627=EF-hand_1=PD(89.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCTGGTGGAGTTCC
R:
GACTCTAGAGCCATGCGCATC
Band lengths:
124-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]