GgaALTA1008511-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009301 | CHRNA1
Description
Acetylcholine receptor subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P09479]
Coordinates
chr7:16306662-16307085:+
Coord C1 exon
chr7:16306662-16306771
Coord A exon
chr7:16306890-16306894
Coord C2 exon
chr7:16306895-16307085
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
CATCCTTCTTCCTTCCGCAGTGC
3' ss Score
11.38
Exon sequences
Seq C1 exon
CAATGGACAGACATAAACCTGAAGTGGAACCCAGATGACTACGGTGGCGTGAAACAAATCCGCATCCCATCAGATGACATCTGGCGCCCAGATCTTGTCCTTTACAACAA
Seq A exon
TGCAG
Seq C2 exon
ATGGCGATTTTGCCATTGTTAAATACACCAAGGTCCTTCTGGAACACACAGGAAAAATCACCTGGACGCCTCCTGCTATCTTTAAAAGTTACTGTGAAATTATAGTCACGTACTTCCCATTCGATCAGCAGAACTGTAGCATGAAGCTGGGAACGTGGACGTATGACGGTACAATGGTGGTTATCAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009301-8-4,8-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.3=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCCAGATCTTGTCCTTTA
R:
GGCGTCCAGGTGATTTTTCCT
Band lengths:
97-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]