GgaALTA1008530-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000007906 | CHRNG
Description
acetylcholine receptor subunit gamma precursor [Source:RefSeq peptide;Acc:NP_001026739]
Coordinates
chr9:15083592-15083998:+
Coord C1 exon
chr9:15083592-15083796
Coord A exon
chr9:15083883-15083895
Coord C2 exon
chr9:15083896-15083998
Length
13 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
GCAGGACGTGGCCTGGAAAGCAA
3' ss Score
-4.45
Exon sequences
Seq C1 exon
GTGTGGCTGCACCTCCTGCCCCGCTATCTGGGCATGCACATGCCAGAGGAGGCCCCGGGGCCACCGCAAGCCACCCGGCGACGTAGTTCCCTGGGGCTGATGGTGAAAGCTGATGAGTACATGCTATGGAAAGCCCGGACCGAGCTTCTCTTTGAGAAGCAGAAGGAGAGGGATGGACTGATGAAAACCGTGCTGGAGAAGATTG
Seq A exon
CAACTGTGCACAG
Seq C2 exon
GACTTCTGCCAGAGCCTGGAGGAGGCGAGCCCAGAGATCCGGGCATGCGTTGAGGCCTGCAACCACATTGCCAACGCCACGCGGGAGCAAAATGACTTCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906-10-15,10-14,10-13-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(28.0=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGAAAACCGTGCTGGA
R:
CAATGTGGTTGCAGGCCTCAA
Band lengths:
99-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]