GgaALTA1008576-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012225 | CIRBP
Description
cold-inducible RNA-binding protein [Source:RefSeq peptide;Acc:NP_001026518]
Coordinates
chr28:2973194-2973467:+
Coord C1 exon
chr28:2973194-2973278
Coord A exon
chr28:2973400-2973402
Coord C2 exon
chr28:2973403-2973467
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CGCATGAATGTTTCCAACAGCAG
3' ss Score
4.58
Exon sequences
Seq C1 exon
GAGGTGGAGACAGAGGCTACGGCGGGAGCAGATTTGACTCCAGAAGCGGAGGATATAATGGCTCCAGAGACTACTATAATAGCAG
Seq A exon
CAG
Seq C2 exon
GAGTCAAGGTGGCTATGGAGACAGGTCTTCAGGAGGGTCCTACAGAGACAGCTACGACAGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012225-6-8,6-7,6-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=NA C2=0.449
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACTCCAGAAGCGGAGGA
R:
GCTGTCTCTGTAGGACCCTCC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]