GgaALTA1008948-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19544324-19586010:+
Coord C1 exon
chr7:19544324-19544367
Coord A exon
chr7:19585834-19585901
Coord C2 exon
chr7:19585902-19586010
Length
68 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
TTATCCATTTATTTCAGAAGAAA
3' ss Score
0.93
Exon sequences
Seq C1 exon
ATGGCCGGCCGCGCTCCGCAGGCGACCGTCCCGCCGCTCTCCGG
Seq A exon
AAAAGCTAAAGCACCTCCTCCTCCATCTGAAACCAAAACAGTCACTGATTGTCCATTTGATGACACAG
Seq C2 exon
AATCAGCCACCATCATCATGGAACAGAAGGAGAATGTAATTGATAAAGACATTGAACTGTCAGTGGTCCTGCCAGGAGATGTGATCAAATACACTACAGTTAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-2-4,2-3,2-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=NA C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]