GgaALTA1009290-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004927 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr17:4984880-4985406:-
Coord C1 exon
chr17:4985304-4985406
Coord A exon
NA
Coord C2 exon
chr17:4984880-4985006
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGC
5' ss Score
6.06
3' ss Seq
CCTCTTTGCCCTTGCAGAAGGTT
3' ss Score
1.04
Exon sequences
Seq C1 exon
GGAGCGGCCTCGCATCCGCCTCTCCACGCTGGACATGGCCCGGCTGGGGGGGCTGCCAGATGGCACCCTGGGCCGTGAGTACATCCGCTTCCTGGAGGACAAC
Seq A exon
NA
Seq C2 exon
GTTTCTCCAGACACCCGCATGCCAGCCAAGTTCGTGGATGATGAAGAGCTGGCCTACGTGATCCAGCGGTACCGGGAAGTGCACGACCTGATGCACACCCTGCTGGGCATGCCCACCAACATGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927-9-11,9-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(15.4=100)
A:
NA
C2:
PF050198=Coq4=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGTACATCCGCTTCCTG
R:
ATCACGTAGGCCAGCTCTTCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]