GgaALTA1009503-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002287 | CRB1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr8:2476868-2494836:-
Coord C1 exon
chr8:2494710-2494836
Coord A exon
NA
Coord C2 exon
chr8:2476868-2477001
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
ATTGATCCTCTTCTTGGCAGTTG
3' ss Score
6.61
Exon sequences
Seq C1 exon
GTGTGAAAAGGACATTGATGAGTGCAGCTCTGATCCATGCCTGAATGGAGGCCTCTGCCAGAACCTGCTCAACAAATTCCACTGCCTCTGCGACGTCAACTATGCTGGAGACCGCTGTGAGATCGAT
Seq A exon
NA
Seq C2 exon
TTGTGGTTTCAGTCATTGCTGCCAATAAAAGGTCAACCCAAGGAACCTACAGCCCCAGCCGGCAGGAGAAAGATGGTGCCCGCGTCGAGATGTGGAGCATGGTGCAGCCACCGCCAATAGAGAGACTCATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287-13-13,13-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=72.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAGAACCTGCTCAACAA
R:
CACCATGCTCCACATCTCGAC
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]