GgaALTA1009508-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001169 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr17:9011012-9015565:+
Coord C1 exon
chr17:9011012-9011138
Coord A exon
chr17:9015462-9015464
Coord C2 exon
chr17:9015465-9015565
Length
3 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGC
5' ss Score
7.35
3' ss Seq
AACACCCTCTTCTACCACAGCAG
3' ss Score
6.25
Exon sequences
Seq C1 exon
TTGTCAAATTAATATAAACAAATGTGATCCAAACCCCTGCCAGAATGGAGGCACCTGTCAAGACTCTGAGAACAAATTCAAGTGTTTGTGCAGTGCCAGCTACACTGGAGAGCGCTGTGACATTAAC
Seq A exon
CAG
Seq C2 exon
CCTCTGTGGGCACACCTTAGCAACTCCTCCGTTGTGGGAGCAGCTGGGGCTGCGGGGACTGCCCTTCTCCTTGCAGTTGGTGCAGCCACGGTGATCGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169-15-25,15-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(7.7=2.3),PF0000822=EGF=WD(100=72.1)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACCTGTCAAGACTCTGA
R:
GAGGAGTTGCTAAGGTGTGCC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]