GgaALTA1009604-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000017378 | CRTAC1
Description
cartilage acidic protein 1 [Source:RefSeq peptide;Acc:NP_001073680]
Coordinates
chr6:21829356-21829808:+
Coord C1 exon
chr6:21829356-21829499
Coord A exon
chr6:21829696-21829700
Coord C2 exon
chr6:21829701-21829808
Length
5 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTTCTTGTTCTCCATGCAGCTC
3' ss Score
10.75
Exon sequences
Seq C1 exon
ACACCAACGAGTGTGCTGAGTTCCCCTTTGTCTGCCCCCGGGAGAAGCCCATCTGCATCAACACCTATGGCGGGTACCGCTGCCGCAGCAACAAGCGCTGCGCCCGTGGCTTCGAGCCCAATGAGGATGGCACAGCATGTGTGG
Seq A exon
CTCAG
Seq C2 exon
GTGGCCTTTTTTGGGGGATACCCCTCCACCGGGAGCTGGCCTTGGGCCCCCCAAGGTGTTCTCCTCTCTCTGGGCTTCGGACTCTGCCTTTGCCTCTATGCACTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017378-19-18,19-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGCCCAATGAGGATGG
R:
AGAGAGGAGAACACCTTGGGG
Band lengths:
104-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]