GgaALTA1010087-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000010153 | CYP21A2
Description
steroid 21-hydroxylase precursor [Source:RefSeq peptide;Acc:NP_001092828]
Coordinates
chr16:40451-41196:-
Coord C1 exon
chr16:41102-41196
Coord A exon
chr16:40549-40602
Coord C2 exon
chr16:40451-40548
Length
54 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
ATATGGGTGTCACCCCACAGCGT
3' ss Score
6.94
Exon sequences
Seq C1 exon
CCCAGAGGTGGTGGTGCTGAGCTCTGCAGCAGCCATCCGTGAGGCACTGGCACGGCGCTGGGGGGACTTCGTGGGACGCCCCCACAGTTACCTGG
Seq A exon
CGTCCCTGGTGTCGCGGGGGGGGCAGGACCTGGCGCTGGGGGATGCATCCCCAG
Seq C2 exon
AGTGGCGACGGCAGCGGGGGGCAACGCGGGGAGCACTGGCGCGAGCTGTGAGGCACCTGGAGCCCCTCCTGGAGCTGCAGGGCTGGGCGCTGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010153-2-3,2-2,2-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.3=100)
A:
NA
C2:
PF0006717=p450=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGCAGCCATCCG
R:
GGCTCCAGGTGCCTCACAG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]