GgaALTA1010100-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011894 | CYP2D6
Description
cytochrome P450 2D3-like [Source:RefSeq peptide;Acc:NP_001182486]
Coordinates
chr1:49264035-49266784:+
Coord C1 exon
chr1:49264035-49265124
Coord A exon
chr1:49266613-49266624
Coord C2 exon
chr1:49266625-49266784
Length
12 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTTGTTTTTATCTGGGTAGTTT
3' ss Score
6.54
Exon sequences
Seq C1 exon
GGTCTCAGATCCGAATTTGGCAAAGAGGTGGAGGAGGAAAAGGATTGGCCCTCATCACCACTCCCCCAACGCTGAGCTGAAAGGAGGAGGAGCTCTGGATCCATGCCAAATTCCATGTTTAAAAGTCAGCAACAACAGGGAGAGGGGAGCAGGAGGCAGAAAAAGAAGACGTGAGGAAGAGGAGGAAGCAAGAGAAAGAGGGCAGCTGCCCGGGGAGGGGAGCAGGAGAAAGGAGGCAGAAGCGAAGGACAGAAACAGTGCTGAGTCAAAACAGGAAGACCAAGGAGTAGACAAACTACAAAATGACACTGCTCCTGTGGCTGTCATCTTGGAGCAACATCTCTGTACTGGGAGTTTTTCTTACTGTCTTTACCATACTTGTTGATTTCATGAAGCGCAGAAAGAAGTGGAGCCGTTACCCCCCAGGCCCAATGCCACTGCCGTTTGTTGGGACCATGCCATACGTTAATTACTACAACCCGCATCTCTCCTTCGAGAAG
Seq A exon
TTTCGCAAGAAG
Seq C2 exon
TTTGGAAACATTTTCAGTCTCCAGAACTGCTGGACCAATGTGGTAGTGCTGAATGGGTACAAAACTGTGAAGGAAGCCCTGGTCAACAAATCAGAGGACTTTGCTGACCGGCCATACATGCCAGTATATGAACATCTGGGCTATGGACATAAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=39.4)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGACCATGCCATACGTT
R:
CCACATTGGTCCAGCAGTTCT
Band lengths:
97-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]