GgaALTA1010645-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22966891-22968417:-
Coord C1 exon
chr5:22968361-22968417
Coord A exon
chr5:22966953-22966959
Coord C2 exon
chr5:22966891-22966952
Length
7 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCTTTATTTTTTCCCTTTAGCCC
3' ss Score
9.82
Exon sequences
Seq C1 exon
ATAAATTTCCGCTGCAAACCTTCCTTCAGGGAGTCGGGATCTCGGAATGTACGGGAG
Seq A exon
CCCATAG
Seq C2 exon
TTGTCCGGCATCACTGGGTGCATCGGAGGCGACAGGAGGGGAAATGCCGGCAGTGCGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-16-13,16-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCGCTGCAAACCTTCCTT
R:
ATTTCCCCTCCTGTCGCCTC
Band lengths:
97-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]