GgaALTA1011000-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002350 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr14:14988536-14989853:-
Coord C1 exon
chr14:14989737-14989853
Coord A exon
NA
Coord C2 exon
chr14:14988536-14988618
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
TCTGTCCCTTCTGTCTACAGTCT
3' ss Score
10.53
Exon sequences
Seq C1 exon
GTTGGAATATTCCATATGAGTTCAACGAGTCTGACCTCAGGATCAGCATGCAGCAGATACACATGTTTTTGAATGAATATGAAGAAGTCCCTTTTGAAGCTCTGACATATCTAACAG
Seq A exon
NA
Seq C2 exon
TCTACAACAAGGATATAGAGCAGGACAAGTACATGCTTGCACCTGGCGGTGACTACTATATCCCACCACATGGTCCATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350-70-64,70-63-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCAACGAGTCTGACCTCA
R:
GTGGGATATAGTAGTCACCGCC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]