GgaALTA1011288-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000026914 | DOK3
Description
docking protein 3 [Source:RefSeq peptide;Acc:NP_001076832]
Coordinates
chr13:9506210-9507130:-
Coord C1 exon
chr13:9506958-9507130
Coord A exon
chr13:9506864-9506884
Coord C2 exon
chr13:9506210-9506863
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CACCCTGCCCTCTATCCCAGCAG
3' ss Score
6.84
Exon sequences
Seq C1 exon
TGACGGAGTTCCCAGTGCTGGTGCTGAGGACGGAGGCGGCTGCCCGCTGCGAGCTGCACGGGCACTACGTGCTGGCAGCCCTGCCCCACAGCCTGACGCTGAAGGATGCGCAGTCCCAGCAGCCCCTGCTCACCTGGCCCTACCCGTTCCTCCGCAAATTCGGCCAAGATCAG
Seq A exon
CAGAACATCTTCTCCTTTGAG
Seq C2 exon
GCCGGCCGCCGCAGCGACTCGGGCGAGGGCACCTTCACCTTCAGCACCCCGCGAGCCGCAGAGCTGTGCCGGGCCGTGGCCGCCGCCATCGCCTGTCAGCAGCAGGGCCAGGAGAGCCCCCAGCCGTCAGCCCAAGGCCTCAGTAACCAACCCTGGGGGGCAGAGGCTGAAGACCCCCAGTGCAGCCCAACCCTGGGGCGGGCGCATTCGGGCTCACACTCGGCCTCTTATCCATCGCTCAACCTTCTCCGCTTCCCCCCCGTGGAGCCGGAGGCTCCTGCCCCTATAGTGTATGCCTCCATCGCACGGGGCCAACAGCCCCACTTCAGGCCGTGCCCCGGGCAGCCGCTCCCCGAGCATCTCTATGAGAACATCTTCACGGCCCAGCCCCGGCCTCTGGCGGAGGAGGAGGCGGAGGAGGAGGAAGGCCGCTGGGAGCTGGGCTGTCGCCAGGCCCCCGAGGGCCACAGCAGCGAGGCAGCCGTGCCCTACCCCGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026914-4-7,4-6,4-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.798
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(57.0=100)
A:
NA
C2:
PF0217412=IRS=PD(40.0=17.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGATGCGCAGTCCCAG
R:
CTGAAGGTGAAGGTGCCCTC
Band lengths:
117-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]