GgaALTA1011366-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009105 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr17:327134-328926:+
Coord C1 exon
chr17:327134-327204
Coord A exon
NA
Coord C2 exon
chr17:328826-328926
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TTATATACATGGCTTCACAGGTG
3' ss Score
7.62
Exon sequences
Seq C1 exon
ATAAACAGCAGCCTGAGTCCTTCACTGACTGCTGTGACCATCCAGGGAGGTGCTCATCACCTGGATCTGCG
Seq A exon
NA
Seq C2 exon
GTGACCAACTGCACAAGTCACAGAATGACAGAACTGTAGGGGTTGGAAGGCTCCTCTGAAGATCCCTGTCTGCTCCTAAAGCAGGTTCCTTCGAGCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105-22-28,22-27,22-26-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(5.4=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGACTGCTGTGACCATCC
R:
CTGCTCGAAGGAACCTGCTTT
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]