GgaALTA1011841-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7750051-7750950:-
Coord C1 exon
chr17:7750838-7750950
Coord A exon
chr17:7750136-7750146
Coord C2 exon
chr17:7750051-7750135
Length
11 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GTGCTTGTTTGCTCTCACAGCTC
3' ss Score
9.06
Exon sequences
Seq C1 exon
GACCATCTACAAGGTTGCCTACCGGCAGGTGTACAAACAGGTACCCCAGCCTGTGGCCTCGTGCTGTCCTGGCTGGAGCAGAACCAGCAGCTACGAGCTCAGCTGCAACACAG
Seq A exon
CTCTGTGCCAG
Seq C2 exon
GTGCCGTGCCAGAATGGTGGCCGCTGCTCCTTCCCTGGAAGATGTGCCTGCCCTCCCGGCTGGATGGGGCCTTCCTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420-11-6,11-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PD(40.8=74.4),PF079748=EGF_2=PU(9.1=7.7)
A:
NA
C2:
PF079748=EGF_2=PD(87.9=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAGAACCAGCAGCTA
R:
GCAGGCACATCTTCCAGGGAA
Band lengths:
92-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]