GgaALTA1012705-3/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003887 | EXOSC2
Description
exosome component 2 [Source:RefSeq peptide;Acc:NP_001012816]
Coordinates
chr17:5965933-5967134:+
Coord C1 exon
chr17:5965933-5966001
Coord A exon
chr17:5966967-5967008
Coord C2 exon
chr17:5967009-5967134
Length
42 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCCTCTTCAGCTTGGCCAGGGT
3' ss Score
-1.48
Exon sequences
Seq C1 exon
GCAGAGGTCCAGTCTGTATTTTCTGATGGGGCTGTATCGCTGCACACCAGGAGTCTGAAATACGGGAAG
Seq A exon
GGTGTGCTTGTTCAGGTCTCTCCCTCCCTTGTGAAACGCCAG
Seq C2 exon
AAGACTCACTTCCATGACTTGCCCTGTGGTGCATCTGTGATCCTCGGCAACAACGGTTTTATCTGGATCTACCCAACTCCAGAACAGAAAGATGAAGAAGCAGGGGGCTTTACAACCAACTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003887-8-11,8-10,8-9,8-8-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACACCAGGAGTCTGAAA
R:
GCCCCCTGCTTCTTCATCTTT
Band lengths:
138-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]