GgaALTA1012767-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000024011 | Ex-FABP
Description
extracellular fatty acid-binding protein precursor [Source:RefSeq peptide;Acc:NP_990753]
Coordinates
chr17:503279-503992:-
Coord C1 exon
chr17:503922-503992
Coord A exon
NA
Coord C2 exon
chr17:503279-503383
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATGTCCTTTTTCAGAGGAAGCCG
3' ss Score
-9.35
Exon sequences
Seq C1 exon
CCCAAAGGGGTGCAGAAAATGGGAGACAACCTTCAAGAAGACCAGTGATGATGGTGAAGTCTACTACTCAG
Seq A exon
NA
Seq C2 exon
CCGAGAAAACGGTGGAGGTGCTGGACACGGACTACAAGAGCTATGCAGTGATCTTTGCAACCAGGGTGAAGGATGGGAGGACCTTGCACATGATGAGGCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024011-4-4,4-3,4-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.0=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGCAGAAAATGGGAGAC
R:
CTTGTAGTCCGTGTCCAGCAC
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]