GgaALTA1012781-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008332 | F2
Description
prothrombin precursor [Source:RefSeq peptide;Acc:NP_989936]
Coordinates
chr5:22742222-22742530:-
Coord C1 exon
chr5:22742425-22742530
Coord A exon
chr5:22742301-22742345
Coord C2 exon
chr5:22742222-22742300
Length
45 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TAACCACCCTCTCCTCACAGATT
3' ss Score
10.71
Exon sequences
Seq C1 exon
GTAACTGTGCTGCTAATCTGGGCCAGAACTATCGGGGGACAATTAACTACACCAAATCAGGCATCGAATGTCAAGTGTGGACAAGCAAATATCCACATATACCTAA
Seq A exon
ATTTAACGCCTCCATTTATCCTGACCTCACTGAGAACTACTGCAG
Seq C2 exon
GAACCCAGACAACAACTCAGAAGGTCCATGGTGCTACACACGAGACCCAACAGTGGAACGGGAAGAGTGCCCCATTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008332-4-9,4-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(42.9=91.7)
A:
NA
C2:
PF0005113=Kringle=PD(55.8=95.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGTGCTGCTAATCTGGGC
R:
CTCGTGTGTAGCACCATGGAC
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]