GgaALTA1013515-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009266 | FGA
Description
fibrinogen alpha chain isoform 1 precursor [Source:RefSeq peptide;Acc:NP_001258840]
Coordinates
chr4:19792427-19796157:-
Coord C1 exon
chr4:19795152-19796157
Coord A exon
chr4:19792528-19792570
Coord C2 exon
chr4:19792427-19792527
Length
43 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
GAGAAGTTTCTTTGCTTTAGGAA
3' ss Score
6.5
Exon sequences
Seq C1 exon
AGACTGCTCCCATCTACAAGGAGGACGAGAAGGAAGCACGTACCATTTTAGTGGGACAGGTGACTTTCACAAGCTAGACAGGCTTCTGCCAGATCTAGAGTCATTCTTCACCCATGACTCTGTATCCACTAGTAGTAGGCACTCAATTGGCTCAAGCACCAGCAGCCATGTGACTGGGGCAGGCAGCAGCCACCTAGGCACTGGAGGGAAAGACAAATTCACAGATTTAGGGGAGGAGGAAGAAGATGACTTTGGAGGACTTCAGCCATCTGGATTTGCTGCTGGCAGTGCGAGTCACTCCAAGACTGTACTGACCAGCTCCTCTTCTAGTTTCAACAAGGGAGGCTCCACTTTTGAAACCAAGTCACTAAAGACCCGTGAAACATCTGAGCAGCTAGGTGGGGTGCAACATGATCAGAGTGCAGAGGACACCCCAGACTTTAAGGCGCGCAGCTTCAGACCAGCAGCAATGAGTACAAGGAGATCCTACAATGGGAAAG
Seq A exon
GAAAAGTCACTTCTGCTTCATGCCACCTGTTCTGGTTCTCTAG
Seq C2 exon
CCACAGTAGAAGCCTGTCTGCGGGGATACTGAACATCTGCAGTCATGTGGTGAGATACTGCCATGACATCTCCTCATCCTCCAGGACTCCAGAGACTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009266-9-11,9-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(15.6=6.8),PF121603=Fibrinogen_aC=WD(100=21.4),PF0014713=Fibrinogen_C=PU(1.3=0.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGACCAGCAGCAATGA
R:
AGTCTCTGGAGTCCTGGAGGA
Band lengths:
145-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]