GgaALTA1013733-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000694 | FMNL1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5F3R6]
Coordinates
chr27:1397698-1398991:+
Coord C1 exon
chr27:1397698-1397838
Coord A exon
NA
Coord C2 exon
chr27:1398866-1398991
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AGGCTCTAACGTGCCTCCAGCTG
3' ss Score
4.83
Exon sequences
Seq C1 exon
GTATGACATGGAGAGCACTGAGAACGGCAGCCCGGGCTCTGAAAAGGGCAAAGCCCTGGAGCGGTCAGTTGAGGACCTGAGCAAAAGCAACTCCTCATCTCCCACACACGGCATCTCCAAAGTGCGGCACCTCACTGTCAG
Seq A exon
NA
Seq C2 exon
CTGCTGCCTCTCGAACCATCACATCCACACCCTCCTCCACCACGTCCACCCCAGCGTCCCCTGCAGCGCCCCGGGCAGCGATGGGGACAGTTGCCCCAGGTCACCTGGCAGCTCCTATTCGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694-6-7,6-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACCTGAGCAAAAGCAA
R:
GGAGGAGGGTGTGGATGTGAT
Band lengths:
110-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]