GgaALTA1015232-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008905 | HABP2
Description
hyaluronan-binding protein 2 preproprotein [Source:RefSeq peptide;Acc:NP_001264308]
Coordinates
chr6:26984116-26984957:+
Coord C1 exon
chr6:26984116-26984235
Coord A exon
chr6:26984786-26984825
Coord C2 exon
chr6:26984826-26984957
Length
40 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ATCTCAACATGGTTTTACAGAAC
3' ss Score
6.58
Exon sequences
Seq C1 exon
CTTCTTCACAGTGCCGGCCAAACCCATGCAAAAATGGAGGAATCTGTGTGCGGCACAGAATCAGATCAAAATTCACCTGCAAGTGCCCTGAACGTTACCGAGGGAGGTTTTGTGAGATTG
Seq A exon
AACCAGATGATTGTTATGAAGAGGACTCCTTTTATTACAG
Seq C2 exon
AGGAAGAGTGAACCAAGCACAGAGTGGCAGGACTTGCCTGCACTGGAATTCCCACTTGCTCTTGCGCTTCTCTATTAATGCATTTATGGAGGATGCTGAGTCTTATGGGATTGGGGAACATAACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.5)
A:
NA
C2:
PF0005113=Kringle=PU(64.6=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGGCACAGAATCAGATCA
R:
AGAGAAGCGCAAGAGCAAGTG
Band lengths:
146-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]