GgaALTA1015694-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000027365 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr23:912304-915660:+
Coord C1 exon
chr23:912304-912964
Coord A exon
chr23:915264-915266
Coord C2 exon
chr23:915267-915660
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTTTTCCCCATCTGGTGCAGAAG
3' ss Score
7.39
Exon sequences
Seq C1 exon
GACCAATGCTAGCGAGAAAGCATCTGTTAACCAAAAATGAAACTTCACCCAAACGGTTTTCACCCACCGGGGAGATGTCTCCTCTGAGGTGCCTGTCCCCAGGGAGAGGGCTGTCCCCGTGCCCACGTGTCTCTCCCAGGAGGGAGGCATCCCCGCTGCGGTGCGTGTCGCCGAGGCTCGAGCTGTCACCCAGCAGGCATCTGTCCCCCAGGAGAGAGCTGTCCCCCAGAGCGTACCTTCCTCCAGAAGGAGAGGCCTCATCTCCCAGCAGAGAGATGCCATCGGGCAGGTATTTATCGCTGAAGAAAACCTTGCCCCCGAGCTGCTCGGAGGCACCCAGGTACCCATCCCCTGGCAAGGAGGACGCGCCTGGGACAAGCAGATCGGCAGCAGATGACAAAATTCAAAGCTCATATCAAGCCCAGCATGGAATATTATCTTCGATGCCTCTACCTCACAGGTTCTTTGGCAAAAATGTACAGCTCTATGAATCCAAGCTG
Seq A exon
AAG
Seq C2 exon
ATAGAACCCAGGAGCCCTCCACGCTCACCCGGCACCATGCAGCCCATCTGCTTCAGACCCTTGCAGGCACCTCACGAACTTCACACCCACAGCCGAGGAGAAGAGAATGTCTTCAGCCACCTTCCACTGCACTCGCAGCAGCTCGCAAGGACCCCGTACCCCATGATTCCCATCGGGGGCATCCAGATGGTCCAGGCCAGGCCAAGCACCCACCCCAGCTCCGTAATGTCCCTGCCAGGGGGACACTTTTCACCTGGTGGCAGTAGCTTTGAGGAGCCATGGGTGCCACGGGAGCCTTCATCTGCATCTGTCTCCCCGGTGGCAAAAGTTTCCAAATACACGCTGTCCCCAGAGCCTACAAGCAGTGAGTGCTTGGAGGAGAAAATGAGGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027365-11-14,11-13,11-12-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACAGGTTCTTTGGCAAA
R:
GGTCTGAAGCAGATGGGCTG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]