GgaALTA1015805-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15333673-15334033:-
Coord C1 exon
chr7:15333911-15334033
Coord A exon
NA
Coord C2 exon
chr7:15333673-15333819
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAAG
5' ss Score
3.86
3' ss Seq
GTACTCCCCTATGTTTTTAGGTT
3' ss Score
9.94
Exon sequences
Seq C1 exon
GGCCATGAGCCTAAGGAGCCAGAGCAGTTGAGAAAGCTGTTCATTGGAGGTCTGAGCTTTGAAACAACAGATGATAGCTTGAGAGAGCACTTTGAAAAATGGGGCACACTCACGGACTGTGTG
Seq A exon
NA
Seq C2 exon
GTTATGAGAGACCCACAAACAAAACGTTCCAGAGGCTTTGGCTTTGTTACTTACTCTTGCGTGGAAGAGGTGGATGCGGCCATGAGCGCTCGACCACATAAGGTGGATGGACGTGTGGTTGAACCAAAGAGAGCAGTTTCAAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250-15-8,15-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.367
Domain overlap (PFAM):
C1:
PF142591=RRM_6=PU(40.0=68.3)
A:
NA
C2:
PF142591=RRM_6=PD(57.1=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAATGGGGCACACTCACG
R:
ATCCACCTCTTCCACGCAAGA
Band lengths:
105-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]