GgaALTA1015808-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009250 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr7:15332684-15332966:-
Coord C1 exon
chr7:15332874-15332966
Coord A exon
chr7:15332726-15332764
Coord C2 exon
chr7:15332684-15332725
Length
39 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TCATCTGTTTTGTGTTCCAGGAG
3' ss Score
11.4
Exon sequences
Seq C1 exon
GTCGTGGGGGTGGTTCAGGCAACTTCATGGGTCGTGGAAATTTTGGAGGTGGTGGAGGAAACTTTGGCCGAGGAGGAAACTTTGGTGGAAGAG
Seq A exon
GAGGCTATGGGGGTGGTGGTGGCGGTGGTGGGAGCAGAG
Seq C2 exon
GAAGCTTTGGGGGTGGTGATGGATACAACGGATTTGGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009250-21-19,21-18,21-17-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.536
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGGTGGTTCAGGCAA
R:
TGTATCCATCACCACCCCCAA
Band lengths:
116-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]