GgaALTA1017142-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000027043 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr2:332405-333534:+
Coord C1 exon
chr2:332405-332792
Coord A exon
chr2:333335-333453
Coord C2 exon
chr2:333454-333534
Length
119 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CCGCTCCTCGCCCCGCGCAGCCC
3' ss Score
6.92
Exon sequences
Seq C1 exon
ACCACCACACTGATCGGGCTGCTGAAGACGGCGCGGCTGCTCCGCCTGGTGCGGGTGGCCCGCAAATTGGACCGGTACTCTGAGTACGGGGCAGCCGTGCTCTTCCTGCTGATGTGCACCTTCGCGCTGATCGCGCACTGGCTGGCCTGCATCTGGTACGCCATCGGCAACGTGGAGGGGCAGCGCATCGGCTGGCTGCACTCGCTGGGCGACCAAATCGGCAAGCCACTGAATGACAGCAACCCCCTGTATGGCCCCACCATCAAGGACAAGTACGTCACGGCGCTCTACTTCACCTTCAGCAGCCTGACCAGCGTCGGCTTCGGCAACGTCTCACCCAACACCAACTCTGAGAAGATCTTCTCCATCTGTGTCATGCTCATCGGCT
Seq A exon
CCCTGATGTACGCCAGCATCTTTGGGAACGTGTCGGCCATCATCCAGCGCCTGTACTCGGGCACGGCGCGCTACCACACGCAGATGCTGCGCGTCCGCGAGTTCATCCGCTTCCACCAG
Seq C2 exon
ATCCCCAACCCGCTGCGCCAGCGCCTGGAGGAGTATTTCCAACATGCCTGGTCCTACACCAATGGCATCGACATGAACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027043-2-7,2-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.6=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.9=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGCAAGCCACTGAATGAC
R:
CGATGCCATTGGTGTAGGACC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]