GgaALTA1017432-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1135689-1136672:+
Coord C1 exon
chr26:1135689-1135854
Coord A exon
chr26:1136404-1136413
Coord C2 exon
chr26:1136414-1136672
Length
10 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
AGTGTCCCCACTCCCCGCAGCGC
3' ss Score
9.71
Exon sequences
Seq C1 exon
GTTGGAGTACAAGTACTCGCGGCTGGTGCTGAATGCGGCGGCCAAGGAGAGCGAGCTGCCGGCACCGGATAGCTGTGCCATCATGGAGGGAGAGGATGGTGAGGATGAGCTCATCTTCACCAGCAAGAAGTCCCTGCTGGGCAAGATCCGCTGCCTGGCCACCAAG
Seq A exon
CGCACCCCAG
Seq C2 exon
ACGGCTTTGACTCCGTCCCCCTGAAGCCATCGTCCGGTGGCACTGACCTGGAGCTGTGAGGGGGCCGTTCTCCCCCCACCCCGTGGCCTTACGGACCCACAGAGCCCCGGGGCACTTTTGTCTCCCCCCACCCCTGGGAAAATGCCAAATACAGACATGGGGGTCAGGAGCACCCCCAGCCTGGCAGGGGGACATGGGGGGCAGCCCTGTGTGTCATGTTGGGGGCACATGTGTGGGGCAGAAGAGTGCATGATGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986-25-36,25-35,25-34-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGAAGTCCCTGCTGG
R:
CCTCACAGCTCCAGGTCAGT
Band lengths:
107-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]