GgaALTA1017964-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102814958-102816581:+
Coord C1 exon
chr2:102814958-102815020
Coord A exon
chr2:102816275-102816277
Coord C2 exon
chr2:102816278-102816581
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TTTGTTCCTGTTCTAACTAGAAG
3' ss Score
7.19
Exon sequences
Seq C1 exon
ATATTCCTGTTTATCCTTTTACTTCTCCAAATCCAAGAGATGCTATAGCTGGTGACATAACAG
Seq A exon
AAG
Seq C2 exon
GTGGCTGCAAAGCAGGATATTTTGGCCCCCAGTGTCTGCGTAAGTTCCATTGTCTCTTTTATGCTTGGAACTGGATCTCCAGTGTAAATGCCAACATTTGGCTTCCAAGTGAAATATTCCAAGATTTGTAACAGTGCAAATGTTTTCTTTACAATGTTCTCTCCAGCGTGCCAGTGCCACGGGGCAGGAGTGCTCAGTGGTGATTGTGATGGAAATACTGGGCAGTGCAGATGTCGAACTGGATTTGAGGGATTTTCCTGTGATACCTGTGCAGCTGGCTATTTTCATTACCCTTTCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-11-14,11-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCCAAATCCAAGAGATGCT
R:
TGGAACTTACGCAGACACTGG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]