GgaALTA1020254-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000461 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr27:2416033-2416858:+
Coord C1 exon
chr27:2416033-2416221
Coord A exon
chr27:2416704-2416741
Coord C2 exon
chr27:2416742-2416858
Length
38 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGAGCCTCCTGTTTTGGCAGACG
3' ss Score
6.21
Exon sequences
Seq C1 exon
ATTCGTGGTCAGAGGTGAAAGTGGACTGTGAGCCCAGCTGGCAGTCCTTCCAATCCAACTGCTATCGCCTGGTGGGAGAGAAGAAGAGTTGGCAGGATGCAAAGAAGACCTGCCTGAGGAGTGGAGGGGACCTGGTCAGCATCCACACGCTCTCCGAGCTGGAGTTTGTTACCAAGCAGGTCAAACAAG
Seq A exon
ACGTGGAAGAGCTCTGGATTGGTCTAAATGATCTCAAG
Seq C2 exon
CTGCAGATGAACTTCGAGTGGTCAGACGGGACACCTGTGAGGTTCACCTATTGGCACCCCTTTGAGCCCAACAATTTCCGTGACAGCCTGGAGGACTGCGTCACCATCTGGGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000461-5-7,5-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(34.3=57.8)
A:
NA
C2:
PF0005916=Lectin_C=FE(47.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACCTGCCTGAGGAGTG
R:
CCGTCTGACCACTCGAAGTTC
Band lengths:
116-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]