GgaALTA1020751-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001183 | MYH10
Description
myosin-10 [Source:RefSeq peptide;Acc:NP_990805]
Coordinates
chr18:1702758-1703765:-
Coord C1 exon
chr18:1703593-1703765
Coord A exon
chr18:1702859-1702861
Coord C2 exon
chr18:1702758-1702858
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCTCTGCTTGTTGCTTGCAGGAG
3' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGAAAAAGCAAATGCCAGGATGAAGCAGCTGAAGCGCCAGCTGGAGGAGGCTGAGGAGGAAGCCACACGTGCAAATGCTTCCCGACGTAAACTGCAGCGTGAGCTGGATGATGCCACGGAGGCAAATGAGGGCCTGAGCCGGGAGGTCAGCACCCTGAAAAACAGGTTAAG
Seq A exon
GAG
Seq C2 exon
GGGCGGCCCCATCACCTTTTCCTCCAGCCGATCCGGGAGGCGCCAGCTGCACATCGAAGGGGCCTCCCTGGAGCTCTCGGACGACGATGCGGAGAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183-68-72,68-71-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCTGGATGATGCCACG
R:
GATCGGCTGGAGGAAAAGGTG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]