GgaALTA1020757-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7563005-7563821:-
Coord C1 exon
chr14:7563613-7563821
Coord A exon
NA
Coord C2 exon
chr14:7563005-7563111
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TTCCACTGTCATTTGCAGAGAGA
3' ss Score
-11.11
Exon sequences
Seq C1 exon
GCAGAGCAACTGAACAATGAGCTGGCAACAGAACGAGCAACCGCACAGAAGAATGAAAATGCCAGGCAGCAACTGGAGAGGCAGAACAAAGAGCTGAGGAGTAAACTGCAAGAGATGGAAGGAGCTGTGAAGTCTAAATTCAAAAGCACAATTGCTGCTCTGGAGGCCAAAATTGCTTCTCTTGAAGAGCAATTGGAACAGGAGGCCAG
Seq A exon
NA
Seq C2 exon
AGAAACAGGCTGCAGCCAAGACATTACGCCAGAAGGACAAGAAGCTGAAGGATGCATTGCTGCAGGTGGAGGACGAGAGAAAACAAGCAGAGCAATACAAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520-48-46,48-45-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGAGGCCAAAATTGCT
R:
CAGCTTCTTGTCCTTCTGGCG
Band lengths:
100-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]