GgaALTA1020791-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2941703-2943211:-
Coord C1 exon
chr20:2943074-2943211
Coord A exon
chr20:2942988-2942996
Coord C2 exon
chr20:2941703-2942987
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACGCCTTTCTCTTTCACCAGCAC
3' ss Score
8.32
Exon sequences
Seq C1 exon
GAGCAGCAGGCCAACTCCAACCTGGTGAAGTACCGCAAGGTGCAGCACGAGCTGGACGACGCTGAGGAACGAGCTGACATTGCTGAGACGCAGGTCAACAAGCTGCGTGCCCGCACCAAGGAGGTCATCACCTTCAAG
Seq A exon
CACGAGTAG
Seq C2 exon
CAGGAGCCTGGCTGCCTGTCCTGCCACCTGCTGTACCTTGGAGGCAAATGGCTGCAACAGTCACTGCCAGCTTTGCACCGAGTTAATAAATGGAGGTGTGCCAGGACCGGCTCCTTTGTGTCTGTGCTGGTACCAGGGGCTGCAGCAGGGAGGTGCAGGGGGAGCTGGGATCCCTTTCCCAGCTGGGAGCATCTTTCAGAGGCAGGCAGCAGCAAGAGGGACAGGCCTTTCCTCACCCTCCACCAGTTTGCTCCAGCTGGGAAAAAGAGTCCTCTCCTCACTCCCATCAAAAGCCCCAAGCACACACTGAGCTGGGACAGAGCAGAGCTGAGGGACAGGGCAGGGTGGAGTGCAGAACAGACCTCACCAAACCCCCTAGTCCCAGGGCCAAACATAACCATCATAAGCACAATCCTGTGCAGCACAAAGAGGTTGATCATGGCTTTGGCAAAGGGACTATGAAAGAAAAGACATCTCCACTAGTTTCTTTAAAATAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-48-50,48-49-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=87.0),PF0003816=Filament=PD(16.5=93.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGAGACGCAGGTCAAC
R:
TTTGCCTCCAAGGTACAGCAG
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]