GgaALTA1021470-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008920 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr17:961341-964100:+
Coord C1 exon
chr17:961341-961459
Coord A exon
NA
Coord C2 exon
chr17:964006-964100
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
CTCAGCACTGTTTCCTGCAGGAG
3' ss Score
7.73
Exon sequences
Seq C1 exon
GGAACTGCTTGTTCTTTGGCTGCCGCCAGAAATCCAAGGACTTCTACTGCCAAGCAGAGTGGGAAGAGCTGGTGACAAAGGGCTTCCTGATGCTTTTCACGGCCTTCTCCAGGGACCAG
Seq A exon
NA
Seq C2 exon
GAGGAGAAGGTGTATGTTCAGCATCGCATCCGGGAGAATGGACAGCTGCTATGGGAGCTGCTGAATGGCCAGAGCGCTCACATCTACCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920-20-24,20-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017516=NAD_binding_1=FE(36.4=100)
A:
NA
C2:
PF0017516=NAD_binding_1=FE(29.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTTGTTCTTTGGCTGC
R:
CAGCCAGGTAGATGTGAGCG
Band lengths:
211-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]