GgaALTA1022775-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009172 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr7:14959402-14960167:-
Coord C1 exon
chr7:14960003-14960167
Coord A exon
chr7:14959491-14959534
Coord C2 exon
chr7:14959402-14959490
Length
44 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AGCATTTTATTATACCTTAGGTA
3' ss Score
6.61
Exon sequences
Seq C1 exon
GTGAAGTCCCAGGATACATTCGATGCGTGGGTTTCAAAATTACGCCACCACCGGTTGTACCGTCAGAATGAGATTGTGAGATCTCCAAGAGATGCTAGCTTCCATATATTCCCCTCAGCCTCTACTACAGAGTCTTCACCAGCTGCTAATGTACCAGATGGAAAG
Seq A exon
GTACAACAAAATAGCTTCCCATGGCAATCTCCTATACCTTGCAG
Seq C2 exon
TAACAGCCTTCCTGCAACCTGCACTACTGGGCAGAGTAAAGTAGCAGCCTGGTTGCAGGACTCAGAAGAGATGGACAGATGTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-8-14,8-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=30.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACGCCACCACCGGTTGTA
R:
CAGGTTGCAGGAAGGCTGTTA
Band lengths:
148-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]