GgaALTA1022776-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3905281-3905914:+
Coord C1 exon
chr27:3905281-3905412
Coord A exon
NA
Coord C2 exon
chr27:3905825-3905914
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
CCGACTGTGCCCGTCCCCAGGCG
3' ss Score
9.13
Exon sequences
Seq C1 exon
CCCGACGTGCTGCCTGCCAAGGGCCGGGAGCAGCAGCGCTCGCAGCGCAGCATCGCCTCACTGGCCGACTCACACACTGAGTTCTTCGACGCCTGTGAGGTGTTCCTCTCTGCCAGCTCCTCTGAGAATGAG
Seq A exon
NA
Seq C2 exon
GCGTCGGACGATGAGTCCTGCATCAGTGAGGCCACCAACAGTATTGATGAGGACCTGGCCGAGCCGGGGGGCCTGGACGTCCCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934-12-18,12-17,12-16-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCTTCGACGCCTGTGAG
R:
TCGGCCAGGTCCTCATCAATA
Band lengths:
116-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]