GgaALTA1022857-3/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005318 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr5:6859738-6860472:-
Coord C1 exon
chr5:6860277-6860472
Coord A exon
chr5:6859782-6859868
Coord C2 exon
chr5:6859738-6859781
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGTCTTTTATTTCAAGACAGAGA
3' ss Score
1.69
Exon sequences
Seq C1 exon
AAAAGATCAGTAAAGCAGTATATTATACATCCAAGCTTTAACAAGACCACTATGGACTCTGACATCGCTTTACTGCAACTGGCTGAGCCCTTAGAATTCAACCACTATGTGCATCCCGTGTGCCTCCCTGCAAAGGAAGAAGTGGTTCAGCCCTCCAGTGTATGCATTATCACAGGATGGGGAGCACAGGAAGAAG
Seq A exon
AGAAAAGAGTAAAAAGTTGTATCAGCTGGAAGTTCCCATCTTGATGCTTGAAGCATGTCAGACCTATTACATAAATCTTCCCAGTAG
Seq C2 exon
AGTGACTCAGAGGATGATCTGTGCTGGATTCCCTCTGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318-22-25,22-24,22-23,22-22-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(27.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCTTTACTGCAACTGGCT
R:
CCAGAGGGAATCCAGCACAGA
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]